BIC 3T MRI Pipeline HPC
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Contents:
About
Usage
Main Pipeline
Sub-Pipelines
Heuristics
Install
FAQs
Troubleshooting
Troubleshooting
Manual-Correction
Citing
Requests
BIC 3T MRI Pipeline HPC
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Welcome to BIC 3T MRI Pipeline HPC’s documentation!
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Welcome to BIC 3T MRI Pipeline HPC’s documentation!
Contents:
About
The BIDS format and BIDS-App pipelines
Usage
Running on one node
Running FreeSurfer-informed FSL DTI tractography on GPU
Metrics Collation
(Optional) HTML Quality Control Report Generator
Preparing your dataset for sharing
Main Pipeline
Inputs
Outputs
Preprocessing derivatives
Analyses derivatives
Metrics:
Preparing your dataset for sharing
FSL DTI probabilistic tractography from QSIPrep Preprocessing (Optional)
(Optional) HTML Quality Control Report Generator
Sub-Pipelines
BIDS-App containers
MRIQC - Anatomical & Functional Quality Control
fMRIPrep - Anatomical & Functional Preprocessing
XCPEngine - Correlation-based resting-state functional connectivity analysis
QSIPrep - DWI preprocessing and reconstruction
FSL DTI probabilistic tractography from QSIPrep Preprocessing
Heuristics
Install
FAQs
How to build with Docker
How to build with Singularity
Troubleshooting
Troubleshooting
Container building
Singularity cache and tmp
SquashFS-tools
Container running
TemplateFlow
Manual-Correction
Citing
The Original Beckman Processing Pipeline Working Group:
Requests
Indices and tables
About
Usage
Install
FAQs
Troubleshooting
Manual-Correction
Citing
Requests
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